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Slack / Private Message Drop, p.296 [SLACK_000510] · slack_pm:msg:03088

Page text: p.296 · original PDF

Date
2020-12-06 10:04
Type
chat message · slack
recipient
Robert F. Garry, Edward C. Holmes, Andrew Rambaut
speaker
Kristian G. Andersen

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It's that midpoint root.... Some early emergence funkiness.

In context

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  1. 2020-12-06 10:02 Kristian G. Andersen open
    Just compared WA1 to Hu-1 and RaTG13. Only three differences between the two, all of them ancestral in WA1 - not Hu-1.
  2. 2020-12-06 10:02 Kristian G. Andersen open
    What do you use as prototypical Lineage A?
  3. 2020-12-06 10:03 Andrew Rambaut open
    WH04
  4. 2020-12-06 10:03 Kristian G. Andersen open
    Lemme include that too - and I should say, all those calls are fully supported in the RaTG13 assembly, so they're good
  5. 2020-12-06 10:04 Kristian G. Andersen
    It's that midpoint root.... Some early emergence funkiness.
  6. 2020-12-06 10:06 Kristian G. Andersen open
    I have WH04 being identical to Hu-1, except the ends - do you have a different sequence?
  7. 2020-12-06 10:08 Andrew Rambaut open
    Hu-1 should have 2 differences from WH04 (EPI_ISL_406801): T:8781:C, C:28143:T
  8. 2020-12-06 10:11 Andrew Rambaut open
    Wuhan-Hu-1: T:8781:C|T:18059:C|C:28143:T WH04: T:18059:C WA1: 0:
  9. 2020-12-06 10:11 Kristian G. Andersen open
    The version I have of Hu-1 (MN908947) is identical - weird... Lemme check again

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