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Slack / Private Message Drop, p.296 [SLACK_000510] · slack_pm:msg:03086

Page text: p.296 · original PDF

Date
2020-12-06 10:03
Type
chat message · slack
recipient
Kristian G. Andersen, Robert F. Garry, Edward C. Holmes
speaker
Andrew Rambaut

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WH04

In context

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  1. 2020-12-06 09:54 Kristian G. Andersen open
    In what sites? Lemme check the bam file to see how confident those RaTG13 calls are in those positions
  2. 2020-12-06 09:55 Kristian G. Andersen open
    There are some low-coverage regions in that genome where you have ambiguous calls
  3. 2020-12-06 10:02 Kristian G. Andersen open
    Just compared WA1 to Hu-1 and RaTG13. Only three differences between the two, all of them ancestral in WA1 - not Hu-1.
  4. 2020-12-06 10:02 Kristian G. Andersen open
    What do you use as prototypical Lineage A?
  5. 2020-12-06 10:03 Andrew Rambaut
    WH04
  6. 2020-12-06 10:03 Kristian G. Andersen open
    Lemme include that too - and I should say, all those calls are fully supported in the RaTG13 assembly, so they're good
  7. 2020-12-06 10:04 Kristian G. Andersen open
    It's that midpoint root.... Some early emergence funkiness.
  8. 2020-12-06 10:06 Kristian G. Andersen open
    I have WH04 being identical to Hu-1, except the ends - do you have a different sequence?
  9. 2020-12-06 10:08 Andrew Rambaut open
    Hu-1 should have 2 differences from WH04 (EPI_ISL_406801): T:8781:C, C:28143:T

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