Glossary
131 abbreviations. Those marked harvested were extracted from the documents themselves, where a term is spelled out immediately before its abbreviation. Search expands these automatically in both directions.
| Acronym | Expansion | Occurrences | Source |
|---|---|---|---|
NIH |
National Institutes of Health | 5,272 | seed |
NIAID |
National Institute of Allergy and Infectious Diseases | 2,505 | seed |
SARS |
severe acute respiratory syndrome | 1,248 | seed |
BMGF |
Bill & Melinda Gates Foundation | 921 | seed |
CDC |
Centers for Disease Control and Prevention | 906 | seed |
HHS |
Department of Health and Human Services | 680 | seed |
WHO |
World Health Organization | 676 | seed |
WIV |
Wuhan Institute of Virology | 509 | seed |
FDA |
Food and Drug Administration | 435 | seed |
FIC |
Fogarty International Center | 283 | harvested |
NSC |
National Security Council | 248 | seed |
USG |
United States Government | 247 | harvested |
VRC |
Vaccine Research Center | 238 | harvested |
MTA |
material transfer agreement | 223 | seed |
ACE2 |
angiotensin-converting enzyme 2 | 217 | seed |
NAS |
National Academies of Sciences | 206 | harvested |
RBD |
receptor binding domain | 204 | seed |
FCS |
furin cleavage site | 174 | seed |
MERS |
Middle East respiratory syndrome | 166 | seed |
FBI |
Federal Bureau of Investigations | 145 | harvested |
USAID |
United States Agency for International Development | 136 | harvested |
OGC |
Office of the General Counsel | 133 | seed |
P3CO |
Potential Pandemic Pathogen Care and Oversight | 130 | seed |
DHHS |
Department of Health and Human Services | 128 | harvested |
DURC |
dual use research of concern | 124 | seed |
OR |
olfactory receptor subunit Develop olfactory receptor | 115 | harvested |
GOF |
gain-of-function | 107 | seed |
BARDA |
Biomedical Advanced Research and Development Authority | 99 | harvested |
EUA |
Emergency Use Authorization | 90 | harvested |
FNIH |
Foundation for the National Institutes of Health | 90 | harvested |
FOIA |
Freedom of Information Act | 87 | seed |
IC |
intelligence community | 85 | seed |
RSA |
Response Spectrum Assay | 81 | harvested |
NCI |
National Cancer Institute | 73 | harvested |
BSL |
biosafety level | 70 | seed |
CIA |
Central Intelligence Agency | 68 | harvested |
ICER |
International Center for Excellence in Research | 64 | harvested |
MSC |
Mali Service Center | 63 | harvested |
PPE |
Personal Protective Equipment | 62 | harvested |
CEPI |
Coalition for Epidemic Preparedness Innovations | 60 | harvested |
RML |
Rocky Mountain Laboratories | 56 | seed |
ODNI |
Office of the Director of National Intelligence | 44 | seed |
ACD |
Advisory Committee to the Director | 37 | harvested |
MRTC |
Malaria Research and Training Center | 37 | harvested |
USMS |
United States Marshals Service | 37 | harvested |
CHD |
Children's Health Defense | 34 | harvested |
NCBI |
National Center for Biotechnology Information | 30 | harvested |
DEFUSE |
Defusing the Threat of Bat-borne Coronaviruses | 29 | seed |
BTCP |
Biological Threat Characterization Program | 28 | harvested |
HVTN |
HIV Vaccine Trials Network | 28 | harvested |
JFK |
John F Kennedy International Airport | 27 | harvested |
MRC |
Medical Research Council | 26 | harvested |
WRAIR |
Walter Reed Army Institute of Research | 26 | harvested |
AAAS |
American Association for the Advancement of Science | 24 | harvested |
UCSF |
University of California-San Francisco | 24 | harvested |
CBP |
U.S. Customs and Border Protection | 22 | seed |
DSMB |
Data and Safety Monitoring Board | 22 | harvested |
PEDV |
Porcine epidemic diarrhea virus | 19 | harvested |
MOH |
Ministry of Health | 18 | harvested |
DOD |
Department of Defense | 16 | harvested |
CNMC |
Children's National Medical Center | 15 | harvested |
DRC |
Democratic Republic of Congo | 15 | harvested |
USDA |
United States Department of Agriculture | 15 | harvested |
FHCRC |
Fred Hutchinson Cancer Research Center | 14 | harvested |
BMS |
Bristol-Myers Squibb Company | 13 | harvested |
CBC |
Canadian Broadcasting Company | 13 | harvested |
CAVD |
Collaboration for AIDS Vaccine Discovery | 11 | harvested |
EHA |
EcoHealth Alliance | 11 | seed |
GWU |
George Washington University | 11 | harvested |
JHU |
Johns Hopkins University | 11 | harvested |
PMI |
President's Malaria Initiative | 11 | harvested |
CID |
Center for Infectious Disease Research | 10 | harvested |
HSGAC |
Homeland Security and Governmental Affairs Committee | 10 | seed |
NPI |
non-pharmaceutical intervention | 10 | seed |
ADDF |
Alzheimer's Drug Discovery Foundation | 9 | harvested |
BSEG |
Biological Sciences Experts Group | 9 | seed |
GH |
Global Health | 9 | harvested |
NEAC |
NIH Ethics Advisory Committee | 9 | harvested |
NYU |
New York University School of Medicine | 9 | harvested |
NMRC |
Naval Medical Research Center | 8 | harvested |
START |
Strategic Timing of Anti-Retroviral Treatment | 8 | harvested |
WAD |
World AIDS Day | 8 | harvested |
CAS |
Chinese Academy of Sciences | 7 | harvested |
CP |
caved to pressure from Trump to issue EUA for Convalescent Plasma | 7 | harvested |
EC |
European Commission | 7 | harvested |
ICMR |
Indian Council of Medical Research | 7 | harvested |
INA |
Immigration and Nationality Act | 7 | harvested |
IRF |
Integrated Research Facility | 7 | harvested |
NLM |
National Library of Medicine | 7 | harvested |
UA |
UNITED AIRLINES | 7 | harvested |
CECI |
Centralized Envelope Comparative Immunogenicity Phase I Study | 6 | harvested |
CI |
Confidential Informants | 6 | harvested |
EVI |
European Vaccine Initiative | 6 | harvested |
IMC |
International Medical Corps | 6 | harvested |
SI |
Strategic Investment | 6 | harvested |
UCT |
University of Cape Town | 6 | harvested |
AIER |
American Institute for Economic Research | 5 | harvested |
AVRS |
AIDS Vaccine Research Subcommittee | 5 | harvested |
CFS |
chronic fatigue syndrome | 5 | harvested |
CJD |
Creutzfeldt-Jakob Disease | 5 | harvested |
GLP |
Good Laboratory Practice | 5 | harvested |
HHMI |
Howard Hughes Medical Institute | 5 | harvested |
IRP |
Intramural research Program | 5 | harvested |
BIDMC |
Beth Israel Deaconess Medical Center | 4 | harvested |
BMJ |
British Medical Journal | 4 | harvested |
DNI |
Director of National Intelligence | 4 | seed |
IMPAACT |
International Maternal Pediatric Adolescent AIDS Clinical Trials Group | 4 | harvested |
NDA |
non-disclosure agreement | 4 | seed |
ADARC |
Aaron Diamond AIDS Research Center | 3 | harvested |
ALC |
Agency Location Code | 3 | harvested |
CAVIMC |
Comprehensive Antibody Vaccine Immune Monitoring Consortium | 3 | harvested |
CHOP |
Children's Hospital of Philadelphia | 3 | harvested |
CIRM |
California Institute for Regenerative Medicine | 3 | harvested |
GIS |
Geographic Information System | 3 | harvested |
GPEI |
Global Polio Eradication Initiative | 3 | harvested |
SAGO |
Scientific Advisory Group for the Origins of Novel Pathogens | 3 | seed |
BWH |
Brigham and Women's Hospital | 2 | harvested |
CFU |
colony-forming unit | 2 | harvested |
CIHR |
Canadian Institutes of Health Research | 2 | harvested |
CWRU |
Case Western Reserve University | 2 | harvested |
IDRI |
Infectious Disease Research Institute | 2 | harvested |
JHM |
Johns Hopkins Medicine | 2 | harvested |
MSU |
Montana State University | 2 | harvested |
NPHIL |
National Public Health Institute of Liberia | 2 | harvested |
OBA |
Office of Biotechnology Activities | 2 | harvested |
OLA |
oligonucleotide ligation assay | 2 | harvested |
PAI |
Polio Antiviral Initiative | 2 | harvested |
SMRB |
Science Management Review Board | 2 | harvested |
UBC |
University of British Columbia | 2 | harvested |
UCSD |
University of California-San Diego | 2 | harvested |
EPPP |
enhanced potential pandemic pathogen | 0 | seed |
Virus and strain names
Not abbreviations — bare identifiers the records never define. Read the note before treating one as a virus: the correspondence uses real isolates, mistranscriptions and jokes in the same register.
RaTG13— bat SARS-related coronavirus, sampled from a Rhinolophus affinis bat at Tongguan town, Mojiang county, Yunnan, in 2013 (331 occurrences)- The closest known relative of SARS-CoV-2 in these records, and the reference point for most of the origins argument in them: "~96% identical overall to SARS-CoV-2, its spike diverges in the RBD" (Proximal Origin draft, fauci_intel p.45). The name follows the convention Holmes spells out in the chats — host species, then location, then sample year — so Ra = Rhinolophus affinis, TG = Tongguan, 13 = 2013; the 2015 sample from the same site is RaTG15, a different virus. Two traps in the text: the Baric interview transcribes it once as a bare "RaTG" (baric_ti p.136), corrected by the errata sheet at p.142 — "Strike 'RaTG' and insert 'RaTG13'" — and one Slack quotation of a conspiracy claim hyphenates it as "RaTG-13". Neither spelling is a distinct virus.
RaTG18— not a virus — an in-joke about a flask in a press photograph (2 occurrences)- Both occurrences are the same 2020-10-26 exchange in the private Slack, after a newspaper profile photographed Edward Holmes in a lab: Andersen asks "does that flask say RaTG18?", and Holmes replies "I really should have written RaTG18 on one of those flasks. Damn. Next time." It is a joke at the expense of readers hunting for lab-leak evidence in photographs. No record in this corpus treats RaTG18 as an isolate, and it appears in no sequence, alignment or tree here.