COVID-19 Records

Glossary

131 abbreviations. Those marked harvested were extracted from the documents themselves, where a term is spelled out immediately before its abbreviation. Search expands these automatically in both directions.

AcronymExpansionOccurrencesSource
NIH National Institutes of Health 5,272 seed
NIAID National Institute of Allergy and Infectious Diseases 2,505 seed
SARS severe acute respiratory syndrome 1,248 seed
BMGF Bill & Melinda Gates Foundation 921 seed
CDC Centers for Disease Control and Prevention 906 seed
HHS Department of Health and Human Services 680 seed
WHO World Health Organization 676 seed
WIV Wuhan Institute of Virology 509 seed
FDA Food and Drug Administration 435 seed
FIC Fogarty International Center 283 harvested
NSC National Security Council 248 seed
USG United States Government 247 harvested
VRC Vaccine Research Center 238 harvested
MTA material transfer agreement 223 seed
ACE2 angiotensin-converting enzyme 2 217 seed
NAS National Academies of Sciences 206 harvested
RBD receptor binding domain 204 seed
FCS furin cleavage site 174 seed
MERS Middle East respiratory syndrome 166 seed
FBI Federal Bureau of Investigations 145 harvested
USAID United States Agency for International Development 136 harvested
OGC Office of the General Counsel 133 seed
P3CO Potential Pandemic Pathogen Care and Oversight 130 seed
DHHS Department of Health and Human Services 128 harvested
DURC dual use research of concern 124 seed
OR olfactory receptor subunit Develop olfactory receptor 115 harvested
GOF gain-of-function 107 seed
BARDA Biomedical Advanced Research and Development Authority 99 harvested
EUA Emergency Use Authorization 90 harvested
FNIH Foundation for the National Institutes of Health 90 harvested
FOIA Freedom of Information Act 87 seed
IC intelligence community 85 seed
RSA Response Spectrum Assay 81 harvested
NCI National Cancer Institute 73 harvested
BSL biosafety level 70 seed
CIA Central Intelligence Agency 68 harvested
ICER International Center for Excellence in Research 64 harvested
MSC Mali Service Center 63 harvested
PPE Personal Protective Equipment 62 harvested
CEPI Coalition for Epidemic Preparedness Innovations 60 harvested
RML Rocky Mountain Laboratories 56 seed
ODNI Office of the Director of National Intelligence 44 seed
ACD Advisory Committee to the Director 37 harvested
MRTC Malaria Research and Training Center 37 harvested
USMS United States Marshals Service 37 harvested
CHD Children's Health Defense 34 harvested
NCBI National Center for Biotechnology Information 30 harvested
DEFUSE Defusing the Threat of Bat-borne Coronaviruses 29 seed
BTCP Biological Threat Characterization Program 28 harvested
HVTN HIV Vaccine Trials Network 28 harvested
JFK John F Kennedy International Airport 27 harvested
MRC Medical Research Council 26 harvested
WRAIR Walter Reed Army Institute of Research 26 harvested
AAAS American Association for the Advancement of Science 24 harvested
UCSF University of California-San Francisco 24 harvested
CBP U.S. Customs and Border Protection 22 seed
DSMB Data and Safety Monitoring Board 22 harvested
PEDV Porcine epidemic diarrhea virus 19 harvested
MOH Ministry of Health 18 harvested
DOD Department of Defense 16 harvested
CNMC Children's National Medical Center 15 harvested
DRC Democratic Republic of Congo 15 harvested
USDA United States Department of Agriculture 15 harvested
FHCRC Fred Hutchinson Cancer Research Center 14 harvested
BMS Bristol-Myers Squibb Company 13 harvested
CBC Canadian Broadcasting Company 13 harvested
CAVD Collaboration for AIDS Vaccine Discovery 11 harvested
EHA EcoHealth Alliance 11 seed
GWU George Washington University 11 harvested
JHU Johns Hopkins University 11 harvested
PMI President's Malaria Initiative 11 harvested
CID Center for Infectious Disease Research 10 harvested
HSGAC Homeland Security and Governmental Affairs Committee 10 seed
NPI non-pharmaceutical intervention 10 seed
ADDF Alzheimer's Drug Discovery Foundation 9 harvested
BSEG Biological Sciences Experts Group 9 seed
GH Global Health 9 harvested
NEAC NIH Ethics Advisory Committee 9 harvested
NYU New York University School of Medicine 9 harvested
NMRC Naval Medical Research Center 8 harvested
START Strategic Timing of Anti-Retroviral Treatment 8 harvested
WAD World AIDS Day 8 harvested
CAS Chinese Academy of Sciences 7 harvested
CP caved to pressure from Trump to issue EUA for Convalescent Plasma 7 harvested
EC European Commission 7 harvested
ICMR Indian Council of Medical Research 7 harvested
INA Immigration and Nationality Act 7 harvested
IRF Integrated Research Facility 7 harvested
NLM National Library of Medicine 7 harvested
UA UNITED AIRLINES 7 harvested
CECI Centralized Envelope Comparative Immunogenicity Phase I Study 6 harvested
CI Confidential Informants 6 harvested
EVI European Vaccine Initiative 6 harvested
IMC International Medical Corps 6 harvested
SI Strategic Investment 6 harvested
UCT University of Cape Town 6 harvested
AIER American Institute for Economic Research 5 harvested
AVRS AIDS Vaccine Research Subcommittee 5 harvested
CFS chronic fatigue syndrome 5 harvested
CJD Creutzfeldt-Jakob Disease 5 harvested
GLP Good Laboratory Practice 5 harvested
HHMI Howard Hughes Medical Institute 5 harvested
IRP Intramural research Program 5 harvested
BIDMC Beth Israel Deaconess Medical Center 4 harvested
BMJ British Medical Journal 4 harvested
DNI Director of National Intelligence 4 seed
IMPAACT International Maternal Pediatric Adolescent AIDS Clinical Trials Group 4 harvested
NDA non-disclosure agreement 4 seed
ADARC Aaron Diamond AIDS Research Center 3 harvested
ALC Agency Location Code 3 harvested
CAVIMC Comprehensive Antibody Vaccine Immune Monitoring Consortium 3 harvested
CHOP Children's Hospital of Philadelphia 3 harvested
CIRM California Institute for Regenerative Medicine 3 harvested
GIS Geographic Information System 3 harvested
GPEI Global Polio Eradication Initiative 3 harvested
SAGO Scientific Advisory Group for the Origins of Novel Pathogens 3 seed
BWH Brigham and Women's Hospital 2 harvested
CFU colony-forming unit 2 harvested
CIHR Canadian Institutes of Health Research 2 harvested
CWRU Case Western Reserve University 2 harvested
IDRI Infectious Disease Research Institute 2 harvested
JHM Johns Hopkins Medicine 2 harvested
MSU Montana State University 2 harvested
NPHIL National Public Health Institute of Liberia 2 harvested
OBA Office of Biotechnology Activities 2 harvested
OLA oligonucleotide ligation assay 2 harvested
PAI Polio Antiviral Initiative 2 harvested
SMRB Science Management Review Board 2 harvested
UBC University of British Columbia 2 harvested
UCSD University of California-San Diego 2 harvested
EPPP enhanced potential pandemic pathogen 0 seed

Virus and strain names

Not abbreviations — bare identifiers the records never define. Read the note before treating one as a virus: the correspondence uses real isolates, mistranscriptions and jokes in the same register.

RaTG13 — bat SARS-related coronavirus, sampled from a Rhinolophus affinis bat at Tongguan town, Mojiang county, Yunnan, in 2013 (331 occurrences)
The closest known relative of SARS-CoV-2 in these records, and the reference point for most of the origins argument in them: "~96% identical overall to SARS-CoV-2, its spike diverges in the RBD" (Proximal Origin draft, fauci_intel p.45). The name follows the convention Holmes spells out in the chats — host species, then location, then sample year — so Ra = Rhinolophus affinis, TG = Tongguan, 13 = 2013; the 2015 sample from the same site is RaTG15, a different virus. Two traps in the text: the Baric interview transcribes it once as a bare "RaTG" (baric_ti p.136), corrected by the errata sheet at p.142 — "Strike 'RaTG' and insert 'RaTG13'" — and one Slack quotation of a conspiracy claim hyphenates it as "RaTG-13". Neither spelling is a distinct virus.
RaTG18 — not a virus — an in-joke about a flask in a press photograph (2 occurrences)
Both occurrences are the same 2020-10-26 exchange in the private Slack, after a newspaper profile photographed Edward Holmes in a lab: Andersen asks "does that flask say RaTG18?", and Holmes replies "I really should have written RaTG18 on one of those flasks. Damn. Next time." It is a joke at the expense of readers hunting for lab-leak evidence in photographs. No record in this corpus treats RaTG18 as an isolate, and it appears in no sequence, alignment or tree here.