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Slack / Private Message Drop, pp.197-198 [SLACK_000411] · slack_pm:msg:02042

Date: 2020-10-01 19:53
Type: chat message · slack
recipient: Robert F. Garry, Edward C. Holmes, Andrew Rambaut
speaker: Kristian G. Andersen

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E.g., I know people found plenty of evidence of Lassa in GTEx individuals from the Broad... Obviously there was nooutbreak of Lassa in Boston - just the Broad doing its thing.

In context

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2020-10-01 19:43 Kristian G. Andersen open

Pretty interesting genomic report from New Zealand (confidential for now, I assume) that looks well-reasoned: https://nextstrain.org/community/narratives/ESR-NZ/GenomicsNarrativeSARSCoV2/2020-10-01
2020-10-01 19:48 Robert F. Garry open

This looks weird: https://osf.io/s4td6/ There was a simultaneous outbreak of the zoonotic Nipah henipavirus in Wuhan - 4 out of 5 patients have the virus in Jinyintan Hospital , along with SARS-Cov2, in their metagenome - which seems to have resolved by itself *AUTHORS* Sandeep Chakraborty
2020-10-01 19:50 Robert F. Garry open

But yes if not prayers we at least have hope! Either he gets it or a HCQ/Azithromycin overdose.
2020-10-01 19:52 Kristian G. Andersen open

Hmmmm that IS weird. Presumably though, if these reads are real surely they must be contamination from other sequencing experiments at WIV.
2020-10-01 19:53 Kristian G. Andersen

E.g., I know people found plenty of evidence of Lassa in GTEx individuals from the Broad... Obviously there was nooutbreak of Lassa in Boston - just the Broad doing its thing.
2020-10-01 19:59 Kristian G. Andersen open

Yeah, I'm pretty sure these are contaminants - you can see the reads via the raw SRA: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092059 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092060 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092061 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092062 Many other viruses in there too
2020-10-01 20:00 Edward C. Holmes open

I'm now your friend again @Kristian Andersen...I obviously unfollowed by mistake. :older_man:
2020-10-01 20:00 Kristian G. Andersen open

Of course... It's okay Eddie - I want to unfollow myself as well :wink:
2020-10-01 20:00 Kristian G. Andersen open

Have a look at this one: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092059&krona=on

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