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Slack / Private Message Drop, p.198 [SLACK_000412] · slack_pm:msg:02043

Page text: p.198 · original PDF

Date
2020-10-01 19:59
Type
chat message · slack
recipient
Robert F. Garry, Edward C. Holmes, Andrew Rambaut
speaker
Kristian G. Andersen

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Yeah, I'm pretty sure these are contaminants - you can see the reads via the raw SRA: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092059 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092060 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092061 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092062 Many other viruses in there too

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  1. 2020-10-01 19:48 Robert F. Garry open
    This looks weird: https://osf.io/s4td6/ There was a simultaneous outbreak of the zoonotic Nipah henipavirus in Wuhan - 4 out of 5 patients have the virus in Jinyintan Hospital , along with SARS-Cov2, in their metagenome - which seems to have resolved by itself *AUTHORS* Sandeep Chakraborty
  2. 2020-10-01 19:50 Robert F. Garry open
    But yes if not prayers we at least have hope! Either he gets it or a HCQ/Azithromycin overdose.
  3. 2020-10-01 19:52 Kristian G. Andersen open
    Hmmmm that IS weird. Presumably though, if these reads are real surely they must be contamination from other sequencing experiments at WIV.
  4. 2020-10-01 19:53 Kristian G. Andersen open
    E.g., I know people found plenty of evidence of Lassa in GTEx individuals from the Broad... Obviously there was nooutbreak of Lassa in Boston - just the Broad doing its thing.
  5. 2020-10-01 19:59 Kristian G. Andersen
    Yeah, I'm pretty sure these are contaminants - you can see the reads via the raw SRA: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092059 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092060 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092061 https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092062 Many other viruses in there too
  6. 2020-10-01 20:00 Edward C. Holmes open
    I'm now your friend again @Kristian Andersen...I obviously unfollowed by mistake. :older_man:
  7. 2020-10-01 20:00 Kristian G. Andersen open
    Of course... It's okay Eddie - I want to unfollow myself as well :wink:
  8. 2020-10-01 20:00 Kristian G. Andersen open
    Have a look at this one: https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR11092059&krona=on
  9. 2020-10-01 20:01 Edward C. Holmes open
    Let's hope that Hope was spreading things around on Trump's chopper.

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