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Slack / Private Message Drop, p.566 [SLACK_000780] · slack_pm:msg:05916

Page text: p.566 · original PDF

Date
2021-03-04 14:19
Type
chat message · slack
recipient
Kristian G. Andersen, Robert F. Garry, Andrew Rambaut
speaker
Edward C. Holmes

Recipients on this medium are inferred from channel membership, not per-message addressing.

I finally looked at this carefully. Did you see the BEAST analysis? TempEST found no temporal structure so they went ahead and used a strick clock anyway. On a 440 nt region. [shared file(s): Latrinne.NatComm20.pdf]

In context

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  1. 2021-03-04 12:55 Kristian G. Andersen open
    I see it Eddie - will take a look. We have a few very recent genomes that smell like recombination to me as well - I'm pretty convinced recombination happens quite frequently, so (as discussed before), I'm not surprised. That said, need proper evidence.
  2. 2021-03-04 12:59 Kristian G. Andersen open
    Yeah, junk. "The VOCs have a lot of mutations so they must be recombinants"....
  3. 2021-03-04 13:25 Kristian G. Andersen open
    *Key* paper from South Africa here - people infected with B.1.351 fully neutralize B.1.351 viruses AND neutralizenon-B.1.351 viruses pretty well. https://www.medrxiv.org/content/10.1101/2021.01.26.21250224v2
  4. 2021-03-04 13:27 Kristian G. Andersen open
    Also, one very interesting finding - although it's n=1. They had somebody infected by non-B.1.351 _but_ with a virus that had the E484K mutation. The serum from that patient absolutely knocked it out of the park when it came to neuttiers against both B.1.351 and non-B.1.351 - so much so, they had to exclude the individual from most analyses. Ifthis holds up, we might have a winner for near-perfect vaccine antigen - spike + E484K, 2P, and dFCS. That'd becool.
  5. 2021-03-04 14:19 Edward C. Holmes
    I finally looked at this carefully. Did you see the BEAST analysis? TempEST found no temporal structure so they went ahead and used a strick clock anyway. On a 440 nt region. [shared file(s): Latrinne.NatComm20.pdf]
  6. 2021-03-04 15:13 Kristian G. Andersen open
    You know, no point in having data get in the way of a good story.

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