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Slack / Private Message Drop, p.472 [SLACK_000686] · slack_pm:msg:04901

Date: 2021-02-01 14:21
Type: chat message · slack
recipient: Kristian G. Andersen, Robert F. Garry, Andrew Rambaut
speaker: Edward C. Holmes

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Thanks for doing that Bob. We did notice the similarity between HA379 and GD pango in parts of the sequence. Good point about HA321, HA363 and HA442. I'll check that with Weifeng. Attached is a tree with the species marked. [shared file(s): Fig_BetaV3.2_RdRp_tidy_AIv1.pdf]

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2021-02-01 14:21 Edward C. Holmes

Thanks for doing that Bob. We did notice the similarity between HA379 and GD pango in parts of the sequence. Good point about HA321, HA363 and HA442. I'll check that with Weifeng. Attached is a tree with the species marked. [shared file(s): Fig_BetaV3.2_RdRp_tidy_AIv1.pdf]
2021-02-01 14:28 Andrew Rambaut open

@Kristian Andersen Seem to have 52 in a simple search.
2021-02-01 14:30 Kristian G. Andersen open

@Kristian Andersen OK - might just be founder on our end. I just don't understand why additional mutations that get added to B.1.1.7 continue to primarily be non-synonymous....
2021-02-01 14:34 Andrew Rambaut open

@Kristian Andersen Actually 25 in England
2021-02-01 14:48 Andrew Rambaut open

@Kristian Andersen There may be a couple of independent origins of K1191N here (because this is only B.1.1.7 with K1191N) but looks like a founder to the US from UK. [shared file(s): K1191N.tree.png]

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