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Slack / Private Message Drop, p.469 [SLACK_000683] · slack_pm:msg:04870

Page text: p.469 · original PDF

Date
2021-01-31 15:32
Type
chat message · slack
recipient
Kristian G. Andersen, Edward C. Holmes, Andrew Rambaut
speaker
Robert F. Garry

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Oh my...can we look at the del in the Tulane patient as a tie-breaker?

In context

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  1. 2021-01-31 15:27 Andrew Rambaut open
    The problem is it is ambiguous where the deletion is:
  2. 2021-01-31 15:27 Andrew Rambaut open
    shared file(s): image.png
  3. 2021-01-31 15:29 Andrew Rambaut open
    Actually in nucleotides it could be one base further towards 3'
  4. 2021-01-31 15:30 Andrew Rambaut open
    Definitely deletes 2 Ls and an A but could be LLA or LAL.
  5. 2021-01-31 15:32 Robert F. Garry
    Oh my...can we look at the del in the Tulane patient as a tie-breaker?
  6. 2021-01-31 15:34 Kristian G. Andersen open
    I extracted the ORF and aligned in AA space - all come out with LLA deleted.
  7. 2021-01-31 15:36 Andrew Rambaut open
    But you could delete LAL and get the same amino acid sequence
  8. 2021-01-31 15:36 Robert F. Garry open
    The whole region is subject to various deletions in some other immune compromised patients.
  9. 2021-01-31 15:37 Kristian G. Andersen open
    I'll just accept I don't understand sequences... :wink:

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