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Slack / Private Message Drop, p.467 [SLACK_000681] · slack_pm:msg:04847

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As far as I can tell - all are 241-243 ("LLA")

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2021-01-31 14:17 Edward C. Holmes open

Brill, thanks Bob!! I'll get onto it.
2021-01-31 14:48 Kristian G. Andersen open

@Andrew Rambaut - do you have a good read on what deletions in the S the B.1.351 lineage has? The original genomes didn't have any, CoVariants lists 242-245, Florian mentioned 242-244, but I see 241-243....
2021-01-31 14:58 Kristian G. Andersen open

Alright - it's 241-243....
2021-01-31 14:59 Robert F. Garry open

Actually I think most are 242-244 - few are 241-243 - our chronic patient has 243 and 244.
2021-01-31 15:01 Kristian G. Andersen

As far as I can tell - all are 241-243 ("LLA")
2021-01-31 15:02 Kristian G. Andersen open

... but holy moly, these genomes are messy... Hmmm.
2021-01-31 15:02 Robert F. Garry open

The main reference got that wrong originally and I fell for the trap. I need to update the virological post - which I amplanning on.
2021-01-31 15:02 Robert F. Garry open

Ok now I'm confused...
2021-01-31 15:04 Andrew Rambaut open

They (Tulio & co) are using some hokey bioinformatics that initially was very poor at indels.