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Slack / Private Message Drop, p.382 [SLACK_000596] · slack_pm:msg:03976

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They DID have a fuck ton of infections in the spring though. Same for UK. Same for RSA.

In context

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2021-01-11 15:13 Andrew Rambaut open

3 very strange events with similar sets of mutations come up.
2021-01-11 15:13 Kristian G. Andersen open

Yeah.
2021-01-11 15:13 Kristian G. Andersen open

And in different parts of the world - with different climates, so not e.g., a "cold" adaptation.
2021-01-11 15:14 Andrew Rambaut open

Yup. Manaus is not chilly this time of year!
2021-01-11 15:15 Kristian G. Andersen

They DID have a fuck ton of infections in the spring though. Same for UK. Same for RSA.
2021-01-11 15:15 Andrew Rambaut open

Rare chronic infections could just be a ready source of these mutations in combination (because they can all be selected for in the very large population sizes). When you get the combination it takes off
2021-01-11 15:16 Andrew Rambaut open

You just don't get them step by step in normal transmission with bottle necks
2021-01-11 15:16 Kristian G. Andersen open

Does Oli/Nuno have any data on reinfections? You mentioned a Virological study yesterday, but not sure if they're looking at that?
2021-01-11 15:16 Andrew Rambaut open

Not yet. Fiacruz has one case of reinfection (not this lineage - but another with 484K)