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Slack / Private Message Drop, p.729 [SLACK_000943] · slack_pm:msg:07644

Page text: p.729 · original PDF

Date
2021-04-26 00:38
Type
chat message · slack
recipient
Kristian G. Andersen, Robert F. Garry, Edward C. Holmes
speaker
Andrew Rambaut

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It seems there are a lot of sequences that are not being put on GISAID: https://science.thewire.in/health/variant-first-identified-in-uk-is-behind-delhis-covid-19-surge-ncdc-chief/

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  1. 2021-04-26 00:32 Edward C. Holmes open
    What's the feeling about B.1.617: is it genuinely increasing transmissibility or is it just riding the wave of the massive number of cases in India?
  2. 2021-04-26 00:37 Andrew Rambaut open
    B.1.617 is split into B.1.617.1 (with E484Q) and B.1.617.2 (without) and both seem to be coming up along with a lotof other stuff. But there are no sequences since the start of April and the sequencing is quite geographicallyhetrogenous. My guess is that most of it is B.1.1.7.
  3. 2021-04-26 00:38 Andrew Rambaut
    It seems there are a lot of sequences that are not being put on GISAID: https://science.thewire.in/health/variant-first-identified-in-uk-is-behind-delhis-covid-19-surge-ncdc-chief/
  4. 2021-04-26 00:41 Edward C. Holmes open
    That's really interesting.
  5. 2021-04-26 01:40 Andrew Rambaut open
    Weirdly B.1.617.2 is coming up a lot in recent travel related international cases (with connection to India) but very little in Indian GISAID genomes so likely somewhere missing from surveillance.
  6. 2021-04-26 02:22 Edward C. Holmes open
    Let's hope they can get their sequencing together. Indian scientists are submitting a ton of papers to bioRxiv.

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