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Slack / Private Message Drop, pp.184-185 [SLACK_000398] · slack_pm:msg:01908

Date: 2020-09-18 18:05
Type: chat message · slack
recipient: Robert F. Garry, Edward C. Holmes, Andrew Rambaut
speaker: Kristian G. Andersen
Topics: Furin cleavage site and molecular features

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And some stats. This is all some fast hacked together stuff, so the boys should take a closer look. Tree above - quick ML tree. You'll see close clustering with the consensus genome, but this might be an artifactbecause non-coverage in the minor genome would just display the consensus genome. Definitely worth looking alittle closer. [shared file(s): variants.tsv, variants_pos.pdf]

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A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

2020-09-18 17:40 Edward C. Holmes open

Great work! So annoying that these people are accusing of fabrication when they are honest scientists working hard. Makes by blood boil.
2020-09-18 18:03 Kristian G. Andersen open

Here's the minor genome - probably not a complete genome, but definitely present. [shared file(s): minor_variant_genome.fa]
2020-09-18 18:03 Kristian G. Andersen open

Alignment + tree [shared file(s): Alignment with minor RmYN02 RAxML Tree.nex, Alignment with minor RmYN02.nex]
2020-09-18 18:03 Edward C. Holmes open

Cool! Quick tree?
2020-09-18 18:05 Kristian G. Andersen

And some stats. This is all some fast hacked together stuff, so the boys should take a closer look. Tree above - quick ML tree. You'll see close clustering with the consensus genome, but this might be an artifactbecause non-coverage in the minor genome would just display the consensus genome. Definitely worth looking alittle closer. [shared file(s): variants.tsv, variants_pos.pdf]
2020-09-18 18:11 Edward C. Holmes open

Got it! Sorry, our posts crossed. I'll have a chat to Weifeng. Nice one. Is RmYN01 closer than ZC45? I'm trying to get more bat ronas as we speak (through a very unusual source). More later.

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