Chat message

Slack / Private Message Drop, p.439 [SLACK_000653] · slack_pm:msg:04539

Date: 2021-01-22 23:06
Type: chat message · slack
recipient: Kristian G. Andersen, Robert F. Garry, Andrew Rambaut
speaker: Edward C. Holmes
Topics: Natural origin / zoonotic spillover Furin cleavage site and molecular features

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New complete genome tree inc. the Cambodian and new pangolin sequence which is from Yunnan. The Yunnan pangolin sequence was of low quality. But, even with this it still falls in a very interesting position because it shows this lineage was already present in China (assuming its not from Yunnan customs) and not just imported in from another country. Pretty cool.

Extracted statements

Rule-extracted, not adjudicated. The grade says what may be done with each one; read the document above before relying on any of them.

Statement	Grade	Attribution	Stance
New complete genome tree inc. the Cambodian and new pangolin sequence which is from Yunnan.	own voice, substantive	speaker_own	asserts
The Yunnan pangolin sequence was of low quality.	needs context	speaker_own	asserts

Statement

Grade

Attribution

Stance

New complete genome tree inc. the Cambodian and new pangolin sequence which is from Yunnan.

own voice, substantive

speaker_own

asserts

The Yunnan pangolin sequence was of low quality.

needs context

speaker_own

asserts

In context

A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

2021-01-22 23:03 Edward C. Holmes open

<cid:F1D6EEC5-C974-49CC-B3ED-4D2A88641D91|cid:F1D6EEC5-C974-49CC-B3ED-4D2A88641D91>
2021-01-22 23:04 Edward C. Holmes open

shared file(s): RAxML_bipartitions.MSA_v2.3_tidy.pdf
2021-01-22 23:06 Edward C. Holmes

New complete genome tree inc. the Cambodian and new pangolin sequence which is from Yunnan. The Yunnan pangolin sequence was of low quality. But, even with this it still falls in a very interesting position because it shows this lineage was already present in China (assuming its not from Yunnan customs) and not just imported in from another country. Pretty cool.
2021-01-22 23:08 Edward C. Holmes open

This tree looks a bit weird - perhaps because of whole genome plus recombination. Will try for some individual gene trees.

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