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Slack / Private Message Drop, p.388 [SLACK_000602] · slack_pm:msg:04039

Page text: p.388 · original PDF

Date
2021-01-12 14:42
Type
chat message · slack
recipient
Kristian G. Andersen, Robert F. Garry, Edward C. Holmes
speaker
Andrew Rambaut

Recipients on this medium are inferred from channel membership, not per-message addressing.

It is a bit tricky - my alignment is a bit different (I did a nucleotide alignment)

In context

A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

  1. 2021-01-12 14:38 Robert F. Garry open
    Yeah Align SC1 with SC2 (and RatG13) just for completeness. The deletions that you see in the UK and ZA variants are EXACT deletions comparing SC1 to the others. Also note the deletion near 484 - these are hotspots!
  2. 2021-01-12 14:38 Andrew Rambaut open
    Are they in the civet versions of SC1?
  3. 2021-01-12 14:39 Andrew Rambaut open
    Or the closest bats to SC1 (could check this myself of course).
  4. 2021-01-12 14:39 Robert F. Garry open
    Good question - that would be interesting...
  5. 2021-01-12 14:42 Andrew Rambaut
    It is a bit tricky - my alignment is a bit different (I did a nucleotide alignment)
  6. 2021-01-12 14:44 Robert F. Garry open
    THey are the same in the civet..
  7. 2021-01-12 14:44 Andrew Rambaut open
    Yes.
  8. 2021-01-12 14:44 Andrew Rambaut open
    And in some of the bats it looks
  9. 2021-01-12 14:49 Robert F. Garry open
    Yes - lots of possibilities, but it looks like SC2 and RaTG13 spikes mostly diverging from SC1 by insertions - including the obvious PRRA.

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