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Slack / Private Message Drop, p.646 [SLACK_000860] · slack_pm:msg:06768

Page text: p.646 · original PDF

Date
2021-03-27 17:58
Type
chat message · slack
recipient
Robert F. Garry, Edward C. Holmes, Andrew Rambaut
speaker
Kristian G. Andersen

Recipients on this medium are inferred from channel membership, not per-message addressing.

... but it requires some proper phylogenetics - i might try some stuff.

In context

A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

  1. 2021-03-27 17:04 Andrew Rambaut open
    Test significance of being 1 base closer to RaTG13 - is it just chance? a reversion?
  2. 2021-03-27 17:05 Kristian G. Andersen open
    Worth (possible?) to test if midpoint fits the early data best too?
  3. 2021-03-27 17:08 Andrew Rambaut open
    I can't see anything obvious in that Tanzanian one - just lots of convergent stuff as you say. I assume they are 3connected cases so probably some chronic case?
  4. 2021-03-27 17:56 Kristian G. Andersen open
    It shares the early unique SNPs with e.g. WA1 and has a couple of additional 'ancestral' ones. Plus a bunch of private mutations. It looks to me like a very old lineage that turned into a chronic infection (in humans or possibly not)
  5. 2021-03-27 17:58 Kristian G. Andersen
    ... but it requires some proper phylogenetics - i might try some stuff.

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