COVID-19 Records

Chat message

Slack / Private Message Drop, p.471 [SLACK_000685] · slack_pm:msg:04889

Page text: p.471 · original PDF

Date
2021-01-31 16:37
Type
chat message · slack
recipient
Kristian G. Andersen, Robert F. Garry, Andrew Rambaut
speaker
Edward C. Holmes

Recipients on this medium are inferred from channel membership, not per-message addressing.

The WHO nomenclature thing will be horrendous. Tulio and Jens is an interesting combination.

In context

A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

  1. 2021-01-31 16:08 Edward C. Holmes open
    The problem lies in 'In all organismal taxonomies...'. What are these people on?
  2. 2021-01-31 16:11 Andrew Rambaut open
    My reply: ```The problem is that taxonomy doesn't really work for virus as far as I am concerned as there is essentially astructured continuum of diversity - i.e. completely artifactual notions of species. And with recombination that just makes thing completely arbitrary. I don't mind labelling bits of the phylogenetic tree for convenient discussion but Ithink we get too focused on trying to replicate a metazoan taxonomy on viruses. That said - to answer you final question - yes, SARS1 and SARS2 are completely distinct (not even sibling clades)with the diversity within each minuscule compared to the divergence between them. This paper gives an overview oftheir relative positions (and some of the complex recombinant history in the sarbecovirus clade):https://www.nature.com/articles/s41564-020-0771-4```
  3. 2021-01-31 16:12 Andrew Rambaut open
    Glad I can't make the WHO nomenclature meeting this week - will be carnage.
  4. 2021-01-31 16:26 Kristian G. Andersen open
    Lol. Jens was right about one thing though - that was indeed a dumb question. "What do you mean, we can't fit these little things into neat little boxes?! Nein!!"
  5. 2021-01-31 16:37 Edward C. Holmes
    The WHO nomenclature thing will be horrendous. Tulio and Jens is an interesting combination.
  6. 2021-01-31 16:43 Robert F. Garry open
    Germans and their neat little boxes - yes I believe it's a thing...

Full conversation →