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Slack / Private Message Drop, p.468 [SLACK_000682] · slack_pm:msg:04859

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Actually happy to hear all this !

In context

A single line often inverts meaning once you see what it answers, so neighbouring messages are always shown.

2021-01-31 15:08 Kristian G. Andersen open

Yeah, those DEL assignments are wrong...
2021-01-31 15:08 Robert F. Garry open

irus name: hCoV-19/South Africa/KRISP-EC-K006856/2020 Accession ID: EPI_ISL_736936 Type: betacoronavirus GISAID Clade GH PANGO Lineage B.1.351 (version: 2021-01-22) AA Substitutions Spike A243T, Spike A701V, Spike D80A, Spike D215G, Spike D614G, Spike E484K, Spike K417N, Spike L18F, Spike L241del, Spike N501Y, Spike Q239del, Spike T240del, E P71L, N T205I, NS3 Q57H, NS3 S171L, NSP2 T85I, NSP3 K837N, NSP5 K90R, NSP6 F108del, NSP6 G107del, NSP6 S106del, NSP12 M124I, NSP12 P323L Passage details/history: Original
2021-01-31 15:09 Robert F. Garry open

Here's one with LLA, but only three include LLA on GSAID.
2021-01-31 15:10 Kristian G. Andersen open

Here's the full alignment from RSA - the deletion is out of frame, so that's probably why there's some confusion. LLAis definitely what's deleted, so that's 241-243. This fucking virus... [shared file(s): Nucleotide alignment.geneious]
2021-01-31 15:11 Robert F. Garry

Actually happy to hear all this !
2021-01-31 15:12 Robert F. Garry open

Needs to be fixed on GSAID
2021-01-31 15:15 Kristian G. Andersen open

And NextStrain... And Covariats... I'll make sure we get it right on Outbreak.info :wink:
2021-01-31 15:16 Robert F. Garry open

But now I need to unfix the Christmas Card.:rage4:
2021-01-31 15:16 Kristian G. Andersen open

Sorry Bob...