Reading Room Production — page 282

Though not labeled clearly, RaTG13 is also shown in the phylogenetic tree in Figure 3 (the one most closely related to 2019-nCoV from Rhinolophus affinis in Yunnan). So could you please revise the figure legend of figure 3 as: Maximum clade credibility tree including 201 RdRp sequences from the Sarbecovirus lineage isolated in bats, including RaTG13__ (Genbank accession numbers: MN996532) and two sequences of 2019-nCoV isolated in humans (GenBank accession numbers:MN908947 and MN975262). This will mean that in your analysis you downloaded the sequence from public database, but it was not included in the original dataset of bat CoVs that I provided to you. 2) In lines 89-91 in the PDF. It says "Our geographic datasets included 694 a-CoV sequences from six zoogeographic regions (22 provinces) and 519 B-CoV sequences from five zoogeographic regions (21 provinces) . The dataset contains some sequences detected from bats in Laos. Are the lao bat CoV sequences also counted in the 694 and 519 sequences? They are not from any Chinese province. If so,the numbers here needs to be corrected. Besides, CAS now requires authors from CAS institutes to deposit coronavirus sequences not only in Genbank but also in the public database of China National Center for Bioinformation when we publish our researches. So I will submit the sequences which I submited to Genbank last year to the Chinese database next week. If you have any questions please let me know. Best Ben AA A:"Alice Latinne" ecohealthalliance.org> KIN [A):2020-04-04 22:26:44 (HAN) Ware A: "HABE" wh.iov.cn> POU: "Hongying Li" ecohealthalliance.org> =F gi: Re: Re: China Maps used in the manuscript Hi Ben, The supplementary material including Table S1 is attached. And yes it includes all the GenBank numbers you gave me (for the sequences you deposited in genbank by yourself) and all sequences already in GenBank from other studies. Please note that at this stage, I won't be able to modify the dataset, the analysis or the figures. Cheers, Alice On Wed, Apr 1, 2020 at 8:07 PM #A#e own. iov.cn> wrote: Hi Alice, Can you please send me the Table S1 which shows the accession number of all sequences in the dataset used in the analysis? It includes both the sequences I share with you and the sequences you download from Genbank, right? Thank you! Ben R44 A: "Alice Latinne" ecohealthalliance.org> AGE AY [A] :2020-03-30 17:43:57 (2HA--) BEA: "AA FE" wh.iov.cn> #3K: "Hongying Li" ecohealthalliance.org> =e: Re: Re: Re: Re: Re: China Maps used in the manuscript